About

🤺 About Me

             

🏫 Education

Undergraduate (2018~2022):

Biological Science, Zhejiang University, Colleage of Life Sciences

PhD student (2022~ ):

Bioinformatics, Zhejiang University, Life Sciences Institute

🎯 Focus on

  • 🧬 Metagenomics and microbial ecology: mechanisms shaping microbial diversity patterns, distribution and dynamics.
  • 💻 Bioinformatics and systems biology: developing ecological network or other mathematical modeling approaches for microbial ecology.

🤩 Hobbies

This is my Wechat Official Accounts:

📥 Contact information

Any question?

Publications 📄

In submission

  1. Yueer Li#, Chen Peng#, Fei Chi, Zinuo Huang, Mengyi Yuan, Chao Jiang.The iPhylo suite: an interactive platform for building and annotating biological and chemical taxonomic trees. In submission
  2. Qiong Chen, Chen Peng, Haoteng Xu, Zhuojie Su, Gulimire Yilihan, Xin Wei, Yueran Shen, Chao Jiang. Microplastics released from disposable paper cups are enriched in the placenta and fetus, leading to metabolic and reproductive toxicity in mice. In submission

Published

  1. C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized reporter score-based enrichment analysis for omics data. Briefings in Bioinformatics (2024). https://doi.org/10.1093/bib/bbae116.
  2. Z. Huang#, C. Peng#, Z. Rong, L. Jiang, Y. Li, Y. Feng, S. Chen, C. Xie, C. Jiang, Longitudinal mapping of personal biotic and abiotic exposomes and transcriptome in underwater confined space using wearable passive samplers. Environmental Science & Technology (2024). https://doi.org/10.1021/acs.est.3c09379.
  3. C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized Reporter Score-based Enrichment Analysis for Omics Data. bioRxiv [Preprint] (2023). https://doi.org/10.1101/2023.10.13.562235.
  4. Q. Chen, M. Yuan, L. Jiang, X. Wei, Z. Liu, C. Peng, Z. Huang, D. Tang, X. Wu, J. Sun, C. Ye, Q. Liu, X. Zhu, P. Gao, L. Huang, M. Wang, M. Jiang, C. Jiang, Progressive community, biogeochemical and evolutionary remodeling of the soil microbiome underpins long-term desert ecosystem restoration. bioRxiv [Preprint] (2023). https://doi.org/10.1101/2023.09.26.559499.
  5. H. Wu, C. Peng, M. Chen, Rethinking the complexity and uncertainty of spatial networks applied to forest ecology. Scientific Reports (2022). https://doi.org/10.1038/s41598-022-16485-9.
  6. L. Fan, C. Peng, X. Zhu, Y. Liang, T. Xu, P. Xu, S. Wu, Dihydrotanshinone I Enhances Cell Adhesion and Inhibits Cell Migration in Osteosarcoma U−2 OS Cells through CD44 and Chemokine Signaling. Molecules (2022). https://doi.org/10.3390/molecules27123714.
  7. X. Zhu, T. Xu, C. Peng, S. Wu, Advances in MALDI Mass Spectrometry Imaging Single Cell and Tissues. Frontiers in Chemistry (2022). https://doi.org/10.3389/fchem.2021.782432.
  8. M. Xia, Y. Liu, J. Liu, D. Chen, Y. Shi, Z. Bai, Y. Xiao, C. Peng, J. Si, P. Li, Y. Qiu, A new synonym of Polygonatum in China, based on morphological and molecular evidence. PhytoKeys (2021). https://doi.org/10.3897/phytokeys.175.63383.

R packages 📦

  1. pcutils

    • It contains many useful functions for statistics and visualization.

    • See the Github page for the HTML documentation.

  2. MetaNet

    • It is a comprehensive network analysis package, especially in various biological omics.

    • See the MetaNet Tutorial

  3. pctax

    • It contains basic pipelines for omics analysis, especially for microbiome analysis.

    • See the pctax Tutorial

  4. ReporterScore

    • Generalized reporter score-based enrichment analysis for omics data.

    • See the Github page for the HTML documentation.

  5. plot4fun

    • plot4fun provides many interesting functions for plotting.

    • See the Github page for the HTML documentation.

Web servers 🕸

  1. iPhylo

    • It is a comprehensive, automated, and interactive platform for biological and chemical taxonomic analysis, developed in cooperation with Li Yueer.

    • See the iPhylo Tutorial for more details.

CC BY-NC-ND
Email: pengchen2001@zju.edu.cn
Built with Hugo
Theme Stack designed by Jimmy