![Featured image of post R](/categories/r/R.2645913c64991bca1efa965dedee075c_hu6a4788f108405f5a18a6ed0a885fe09a_9481_250x150_fill_q75_box_smart1.jpg)
Categories
2024
R进阶使用技巧
![R进阶使用技巧](/p/r-tips/images/r-tips_hu4be57cbf1e7abad561884efb20303001_136081_120x120_fill_box_smart1_3.png)
宏基因组分箱(binning)|2. MetaWRAP实战深入binning
![宏基因组分箱(binning)|2. MetaWRAP实战深入binning](/p/binning2/images/metawrap_hu2963cc1cce9967a3e88f5a5b59f9fa2f_122273_120x120_fill_box_smart1_3.png)
宏基因组分箱(binning)|1.Metabat实战了解binning
![宏基因组分箱(binning)|1.Metabat实战了解binning](/p/binning/images/binning_hu46e1bb47e26cf7a63c07095494598477_246769_120x120_fill_box_smart1_3.png)
宏基因组分析流程(Metagenomic workflow)202405|持续更新
![宏基因组分析流程(Metagenomic workflow)202405|持续更新](/p/metagenomic-workflow/images/workflow_hu65ad38ebc366cd14800eee2145e15bd0_361464_120x120_fill_box_smart1_3.png)
Slurm集群使用基础
![Slurm集群使用基础](/p/slurm/images/slurm_hu2774f7938fc511391aca1bdb6f69e794_406707_120x120_fill_box_smart1_3.png)
微生物群落构建(community assembly)
![微生物群落构建(community assembly)](/p/community-assembly/comm_hub260f10f12bf64e0acb74c7ee8e930d5_36974_120x120_fill_q75_box_smart1.jpg)
GTDB基因组分类数据库及GTDB-Tk工具
![GTDB基因组分类数据库及GTDB-Tk工具](/p/gtdb/images/gtdb_hu27375a09fb90363caf7218ea3a4b788e_3872041_120x120_fill_box_smart1_3.png)
使用FastANI与Skani计算平均核苷酸一致性(ANI)
![使用FastANI与Skani计算平均核苷酸一致性(ANI)](/p/ani/images/ani3_hu978da381f2ffda5ad94e46150adc5b8e_126696_120x120_fill_box_smart1_3.png)
上传测序数据至ENA数据库
![上传测序数据至ENA数据库](/p/ena/images/ena5_hu667bef5482f9c4af52fb07b5ccfca116_108152_120x120_fill_box_smart1_3.png)
R调用Taxonkit展示系统发育信息
![R调用Taxonkit展示系统发育信息](/p/taxonkit-r/index.en_files/figure-html/unnamed-chunk-11-1_hu9eef7bfbf5881e79b8ada15c4aa858f3_470179_120x120_fill_box_smart1_3.png)
使用uTools提高办公效率
![使用uTools提高办公效率](/p/utools/images/utools_hud10dd1e81f5009bd212cc1d877d36468_681523_120x120_fill_box_smart1_3.png)
使用BiG-SCAPE挖掘微生物组BGCs
![使用BiG-SCAPE挖掘微生物组BGCs](/p/big-scape-bgcs/images/big3_hu11ca157f533c3143a2c72d5ce901524e_403000_120x120_fill_box_smart1_3.png)
微生物组的生物合成基因簇(BGCs)分析
![微生物组的生物合成基因簇(BGCs)分析](/p/bgcs/images/BGC_overview_huc665b7f65da657d81eb95c9628492bca_1214457_120x120_fill_box_smart1_3.png)
使用antiSMASH数据库及软件分析微生物组
![使用antiSMASH数据库及软件分析微生物组](/p/antismash/images/clusterrules_hu3bdb12f3634d39a74eb936e057b959f9_1262742_120x120_fill_box_smart1_3.png)
浙江大学蒋超课题组合作ES&T:开发使用可穿戴被动采样器对个体生物和化学暴露组与转录组进行纵向测绘
![浙江大学蒋超课题组合作ES&T:开发使用可穿戴被动采样器对个体生物和化学暴露组与转录组进行纵向测绘](/p/es-t/images/qt_graphical_abstract_hu6be8613c71274fd8009f47b699eaec86_1378446_120x120_fill_box_smart1_3.png)
ReporterScore包(GRSA方法)正式发表于杂志Briefings in Bioinformatics
![ReporterScore包(GRSA方法)正式发表于杂志Briefings in Bioinformatics](/p/grsa-bib/images/BIB_hu805f07469de088d0c77b027bd469dc4d_733284_120x120_fill_box_smart1_3.png)
Mermaid 入门
![Mermaid 入门](/p/mermaid/images/mermaid_hu9e614189135e10e65405210d01f73f9e_70493_120x120_fill_box_smart1_3.png)
CSL格式原理和应用
![CSL格式原理和应用](/p/csl/images/csl_editor_huee21e166e179a522e444bee9b7b9c293_509598_120x120_fill_box_smart1_3.png)
R快速翻译和绘图中文支持
![R快速翻译和绘图中文支持](/p/translator/images/fanyi_huadccf7c6cff02e8de6470f20b244ac3b_231735_120x120_fill_box_smart1_3.png)
2023
龙年启科研新篇
![龙年启科研新篇](/p/new_year/index.en_files/figure-html/unnamed-chunk-2-2_huca5c6623a718ec2af65b14a202a8f944_66831_120x120_fill_box_smart1_3.png)
CRISPR 相关学习
![CRISPR 相关学习](/p/crispr/images/stress_huf5e3274162e3c0e5da3a4d689c15a082_1146548_120x120_fill_box_smart1_3.png)
常用扩增子数据库
![常用扩增子数据库](/p/amplicon/images/nbt1_hu996931910b6bf7f12a9b9b7894056410_2083825_120x120_fill_box_smart1_3.png)
地球微生物组计划介绍(EMP)
![地球微生物组计划介绍(EMP)](/p/emp/images/emp1_hu176495a56921be1a28750dc039ce94b8_841214_120x120_fill_box_smart1_3.png)
iPhylo 生成并绘制优美的分类树
![iPhylo 生成并绘制优美的分类树](/p/iphylo/images/iphylo_hu44f41ab3d16732f4d8173bf2a2c9bf6d_976324_120x120_fill_box_smart1_3.png)
降维/排序分析(ordination analysis)
![降维/排序分析(ordination analysis)](/p/ordination-analysis/index.en_files/figure-html/unnamed-chunk-9-1_huadaeaa4ebae2deab99e1109e626c2a57_185666_120x120_fill_box_smart1_3.png)
土壤微生物组综述(soil microbiome)
![土壤微生物组综述(soil microbiome)](/p/soil-microbiome/images/soil2_hub1fbfac363db2770c1a8078257e47c18_354854_120x120_fill_box_smart1_3.png)
基因集富集分析(GSEA)简介
![基因集富集分析(GSEA)简介](/p/gsea/images/gsea_intro_hu5cc2c0d936b21c288c6528127fcaa985_152911_120x120_fill_q75_box_smart1.jpg)
KEGG 数据库及API (2)
![KEGG 数据库及API (2)](/p/kegg-api2/images/hsa00600_hu2a66b887f76e1e692031b96d7bf86f46_26948_120x120_fill_box_smart1_3.png)
KEGG 数据库及API (1)
![KEGG 数据库及API (1)](/p/kegg-api/images/M00007_hua5882dbf6ee03d6c18f690b0a4ac5684_206436_120x120_fill_box_smart1_3.png)
使用ReporterScore包进行富集分析
![使用ReporterScore包进行富集分析](/p/reporterscore-package/index.en_files/figure-html/unnamed-chunk-7-1_hu6015c55180036f42d99847a569b96e68_282413_120x120_fill_box_smart1_3.png)
R微生物组分析流程(pctax包)
![R微生物组分析流程(pctax包)](/p/r-pctax/index.en_files/figure-html/rda-1_hu97483387ecb0ed5e4c4cad6758b9b089_143717_120x120_fill_box_smart1_3.png)
R绘制柱形图及其变换(bar chart)
![R绘制柱形图及其变换(bar chart)](/p/r-bar-chart/images/barchart_hue6695c576ffcb589442c4c147a726928_158594_120x120_fill_box_smart1_3.png)
gut 2023 肠道大会个人总结
![gut 2023 肠道大会个人总结](/p/gut-2023/images/gut2023_hu66373a927f81782480fa2c0c3afe4d16_1071135_120x120_fill_q75_box_smart1.jpeg)
Antibiotics resistance gene 抗生素抗性基因(ARG)
![Antibiotics resistance gene 抗生素抗性基因(ARG)](/p/antibiotics-resistance/images/ARG_mechanism_hu3d756b490213c73e905feda3b49bca32_266021_120x120_fill_box_smart1_3.png)
Reporter Score 微生物功能富集分析
![Reporter Score 微生物功能富集分析](/p/reporter-score/images/misuse2_hu0533df8c600b6ebf5e775c57536fef00_337235_120x120_fill_q75_box_smart1.jpeg)
R绘制优美的进化树(进阶)
![R绘制优美的进化树(进阶)](/p/r-tree2/images/example3_hudb155f8e92790c1df7e82ecec90ce7ca_1845460_120x120_fill_box_smart1_3.png)
R绘制优美的进化树(基础)
![R绘制优美的进化树(基础)](/p/r-tree/index.cn_files/figure-html/unnamed-chunk-15-1_hu64a041d9665808fa476c64c6e2c5c164_245532_120x120_fill_box_smart1_3.png)
蒋超实验室项目技术员招聘
![蒋超实验室项目技术员招聘](/p/werving-of-jiang-lab/images/research%20field_hu4f5e226684f5961809532c452b77bd89_122405_120x120_fill_box_smart1_3.png)
R绘制优美的地图
![R绘制优美的地图](/p/r-map/index_files/figure-html/unnamed-chunk-22-1_hu25d347af0f26b4f0f63f78f0a939c84a_495129_120x120_fill_box_smart1_3.png)
物种多样性研究的理论和方法
![物种多样性研究的理论和方法](/p/biodiversity/images/diversity_hu497d07d6085df17c480b385e6cae73d8_591092_120x120_fill_box_smart1_3.png)
R-shiny应用开发(基础)
![R-shiny应用开发(基础)](/p/rshiny/Rshiny_hu0864f99837a84b3a0d6c26cdeddf969b_6899_120x120_fill_q75_box_smart1.jpg)
紫金春日
![紫金春日](/p/spring/images/%E8%A5%BF%E5%BA%9C_hu9cec70a3d2a230bf39151bcb5362fd23_124766_120x120_fill_q75_box_smart1.jpg)
R-统计分析
![R-统计分析](/p/r-statistics/index.en_files/figure-html/unnamed-chunk-4-1_hu1ce6d87f2ad4652672fc15e5d122caa7_109594_120x120_fill_box_smart1_3.png)
ChatGPT帮我调整stack主题
![ChatGPT帮我调整stack主题](/p/chatgpt-stack/ChatGPT_huce8d906dd473ab038e4f784f810328ac_7886_120x120_fill_q75_box_smart1.jpg)
R语言学习
![R语言学习](/p/r-learning/images/data2viz_hu2949f787b14e5432e8dbe93255a87ee8_671473_120x120_fill_box_smart1_3.png)
春之伊始
![春之伊始](/p/%E6%98%A5%E4%B9%8B%E4%BC%8A%E5%A7%8B/spring_hu0533df8c600b6ebf5e775c57536fef00_394558_120x120_fill_q75_box_smart1.jpeg)
Markdown Syntax Guide
![Markdown Syntax Guide](/p/markdown-syntax-guide/pawel-czerwinski-8uZPynIu-rQ-unsplash_hud7e36f7e20e71be184458283bdae4646_55974_120x120_fill_q75_box_smart1.jpg)